PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009792225.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 215aa    MW: 24135.8 Da    PI: 10.4003
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009792225.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.89.1e-211863449
                    -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    + +sn  vtfskRr g++KKA+EL++LC++e+a+i+fs+  k++ +
  XP_009792225.1 18 SKESNLLVTFSKRRSGLFKKASELCTLCGVEIAIIVFSPGHKVFSF 63
                    6678999********************************9999877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.3E-29766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.273767IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.37E-26887IPR002100Transcription factor, MADS-box
CDDcd002653.94E-31877No hitNo description
PRINTSPR004042.6E-16929IPR002100Transcription factor, MADS-box
PfamPF003191.3E-221763IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-162944IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-164465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009960Biological Processendosperm development
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MARKMSKGRQ KIQMTKMSKE SNLLVTFSKR RSGLFKKASE LCTLCGVEIA IIVFSPGHKV  60
FSFGHPNVES IIDRFLTRNI PSSTTANFSS TTCQLVEAHR NANVRELNKQ LMEILNQLEF  120
EKKHEVELVK INKAKIGKNW WERPVNELGH AELEQLKLGM EELKKXVQMQ KIFIESSNTP  180
AFFLGASSSN GGQADVKNIT GLGLSMATHG HTIFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A3e-16898186Myocyte-specific enhancer factor 2A
3kov_B3e-16898186Myocyte-specific enhancer factor 2A
3kov_I3e-16898186Myocyte-specific enhancer factor 2A
3kov_J3e-16898186Myocyte-specific enhancer factor 2A
3p57_A3e-16898186Myocyte-specific enhancer factor 2A
3p57_B3e-16898186Myocyte-specific enhancer factor 2A
3p57_C3e-16898186Myocyte-specific enhancer factor 2A
3p57_D3e-16898186Myocyte-specific enhancer factor 2A
3p57_I3e-16898186Myocyte-specific enhancer factor 2A
3p57_J3e-16898186Myocyte-specific enhancer factor 2A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009792225.11e-157PREDICTED: agamous-like MADS-box protein AGL62
SwissprotQ9FKK21e-64AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLA0A0V0H2C11e-120A0A0V0H2C1_SOLCH; Putative agamous-like MADS-box protein AGL62-like (Fragment)
STRINGSolyc01g106720.1.11e-119(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.18e-66AGAMOUS-like 62